CRISPR/Cas Delivery Strategies in Animals and Plants: Current Applications, Limitations and Future Directions

Authors

  • Farwa Yaqub M.Phil Student, University of Agriculture, Faisalabad. Author
  • Ayesha Waheed M.Phil Student, University of Agriculture, Faisalabad Author
  • Mahnoor Fatima M.Phil Student, University of Agriculture, Faisalabad Author
  • Ahmad Munir M.Phil Student, University of Agriculture, Faisalabad Author

DOI:

https://doi.org/10.58475/2026.64.1.1275

Keywords:

CRISPR/Cas9 System, genome editing, delivery tools, viral vectors, non-viral vectors, Pakistan

Abstract

CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) - Cas (CRISPR associated protein) advancements revolutionize genome editing, enabling precise genetic modifications effectively. CRISPR/Cas technology has been applied in both animal and plant cells for therapeutic purposes and gene function studies in plants. In animals, CRISPR/Cas has various applications for therapeutic purposes. But the main concern is to precisely and efficiently deliver components of CRISPR/Cas inside host cells. For this, various delivery tools have been investigated for in vivo and in vitro incorporation of the CRISPR/Cas components such as viral vectors, non-viral vectors, and physical methods. Each delivery tool has its applications and limitations, and selection of appropriate methods is necessary for treating several diseases. In plants, the widely used approach for delivering CRISPR/Cas components is Agrobacterium-mediated transformation. Other methods include direct (physical and chemical methods) and indirect delivery tools which result in efficient editing of genome in plants. In this review, we are focusing on the efficient delivery method with minimal drawbacks which cause efficient editing of genome in both plants and animals. 

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References

Andersson, M., H. Turesson, N. Olsson, A.S. Fält,P. Ohlsson, M.N. Gonzalez and P. Hofvander. 2018. Genome editing in potato via CRISPR-Cas9 ribonucleoprotein delivery. Physiol. Plant. 164(4): 378-384.

Asmamaw, M. and B. Zawdie. 2021. Mechanism and applications of CRISPR/Cas-9 mediated genome editing. BTT. 353-361.

Behr, M., J. Zhou, B. Xu and H. Zhang. 2021. In vivo delivery of CRISPR-Cas9 therapeutics: progress and challenges. Acta Pharm. Sin. B. 11(8): 2150-2171.

Bharathkumar, N., A. Sunil, P. Meera, S. Aksah, M. Kannan, K.M. Saravanan and T. Anand. 2022. CRISPR/Cas-based modifications for therapeutic applications: a review. Mol. Biotechnol. 64(4): 355-372.

Bijlani, S., K.M. Pang, V. Sivanandam, A. Singh and S. Chatterjee. 2022. The role of recombinant AAV in precise genome editing. Front. Genome ed.3:799722.

Bonamassa, B., L. Hai and D. Liu. 2011. Hydrodynamic gene delivery and its applications in pharmaceutical research. Pharm. Res. 28: 694–701.

Boucher, P., X. Cui and D.T. Curiel. 2020. Adenoviral vectors for in vivo delivery of CRISPR-Cas gene editors. J. Control. Release. 327: 788-800.

Butt, H., A. Eid, Z. Ali, Z. Atia, M.A. Mokhtar, M.M. Hassan, N. Lee and M.M. Mahfouz. 2017. Efficient CRISPR/Cas9-mediated genome editing using a chimeric single-guide RNA molecule. Front. Plant Sci. 8-1441.

Cai, J., S. Huang, Y. Yi and S. Bao. 2019. Ultrasound microbubble-mediated CRISPR/ Cas9 knockout of C-erbB-2 in HEC-1A cells. J. Int. Med. Res. 47(5): 2199-2206.

Cai, Q., L. Qiao, M. Wang, B. He, F.M. Lin, J. Palmquist and H. Jin. 2018. Plants send small RNAs in extracellular vesicles to fungal pathogen to silence virulence genes. Sci. 360(6393): 1126-1129.

Carroll K.J., CA. Makarewich and J. McAnally. 2016. A mouse model for adult cardiac specific gene deletion with CRISPR/Cas9. Proc. Natl. Acad. Sci. U. S. A. 113:338–43.

Chen, F., M. Alphonse and Q. Liu. 2020. Strategies for nonviral nanoparticle based delivery of CRISPR/Cas9 therapeutics. Wiley Interdisciplinary Reviews: Int. J. Nanomed. 12(3): e1609.

Chennakesavulu, K., H. Singh, P.K. Trivedi, M. Jain and S.R. Yadav. 2022. State-of-the Art in CRISPR Technology and Engineering Drought, Salinity, and Thermo-tolerant crop plants. Plant cell reports. 41(3):815–831.

Chen, S., B. Lee, A.Y.F. Lee, A.J. Modzelewski and L. He. 2016. Highly efficient mouse genome editing by CRISPR ribonucleoprotein electroporation of zygotes. J. Biol. Chem. 291(28): 14457-14467.

Chen, S., Y. Yao, Y. Zhang and G. Fan. 2020. CRISPR system: Discovery, development and off target detection. Cell. Signal. 70: 109577.

Cho, S.W., S. Kim, J.M. Kim and J.S. Kim. 2013. Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat. Biotechnol. 31(3): 230-232.

Choi, J.G., Y. Dang, S. Abraham, H. Ma, J. Zhang, H. Guo and N. Manjunath. 2016. Lentivirus pre-packed with Cas9 protein for safer gene editing. Gene Ther. 23(7): 627-633.

Chuang, C.K., C.H. Chen, C.L. Huang, Y.H. Su, S.H. Peng, T.Y. Lin and C.F. Tu. 2017. Generation of GGTA1 mutant pigs by direct pronuclear microinjection of CRISPR/Cas9 plasmid vectors. Anim. Biotechnol. 28(3): 174-181.

Coelho, T., D. Adams, A. Silva, P. Lozeron, P.N. Hawkins, T. Mant and O.B. Suhr. 2013. Safety and efficacy of RNAi therapy for transthyretin amyloidosis. N. Engl. J. Med. 369(9): 819-829.

Cong, L., F.A. Ran, D. Cox, S. Lin, R. Barretto, N. Habib and F. Zhang. 2013. Multiplex genome engineering using CRISPR/ Cas systems. sci. 339(6121): 819-823.

D’Astolfo, D.S., R.J. Pagliero, A. ras, W.R. Karthaus, H. Clevers, V. Prasad and N. Geijsen. 2015. Efficient intracellular delivery of native proteins. Cell. 161(3): 674-690.

Dad, H.A., T.W. Gu, A.Q. Zhu, L.Q. Huang and L.H. Peng. 2021. Plant exosome-like nanovesicles: emerging therapeutics and drug delivery nanoplatforms. Mol. Ther. 29(1): 13-31.

Danthinne, X. and M.J. Imperiale. 2000. Production of first generation adenovirus vectors: a review. Gene Ther. 7(20): 1707-1714.

Divya, K. and M.S. Jisha. 2018. Chitosan nanoparticles preparation and applications. Environ. Chem. Lett. 16: 101-112.

Doudna, J.A. and E. Charpentier. 2014. The new frontier of genome engineering with CRISPR-Cas9. Sci. 346(6213): 1258096.

Eoh, J. and L. Gu. 2019. Biomaterials as vectors for the delivery of CRISPR Cas9. Biomater. Sci. 7(4): 1240-1261.

Fang, H., A.M. Bygrave, R.H. Roth, R.C. Johnson and R.L. Huganir. 2021. An optimized CRISPR/Cas9 approach for precise genome editing in neurons. Elife. 10: e65202.

Felgner, P.L., T.R. Gadek, M. Holm, R. Roman, H.W. Chan, M. Wenz and M. Danielsen. 1987. Lipofection: a highly efficient, lipid mediated DNA-transfection procedure. Proc. Natl. Acad. Sci. USA. 84(21): 7413-7417.

Feng, Z., Y. Mao, N. Xu, B. Zhang, P. Wei, D.L. Yang and J.K. Zhu. 2014. Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis. Proc. Natl. Acad. Sci. USA. 111(12): 4632-4637.

Fernandes, M., I. Lopes, J. Teixeira, C. Botelho and A.C. Gomes. 2020. Exosome-like nanoparticles: a new type of nanocarrier. Curr. Med. Chem. 27(23): 3888-3905.

Fitzgerald, K., M. Frank-Kamenetsky, S. Shulga Morskaya, A. Liebow, B.R. Bettencourt, J.E. Sutherland and A. Simon. 2014. Effect of an RNA interference drug on the synthesis of proprotein convertase subtilisin/kexin type 9 (PCSK9) and the concentration of serum LDL cholesterol in healthy volunteers: a randomised, single-blind, placebo-controlled, phase 1 trial. The Lancet. 383(9911): 60-68.

Garg, U., S. Chauhan, U. Nagaich and N. Jain. 2019. Current advances in chitosan nanoparticles based drug delivery and targeting. Adv. Pharm. Bull. 9(2): 195.

Gelvin, S.B. 2017. Integration of Agrobacterium T-DNA into the plant genome. Annu. Rev. Genet. 51: 195-217.

Gil‐Humanes, J., Y. Wang, Z. Liang, Q. Shan, C.V. Ozuna, S. Sánchez‐León and D.F. Voytas. 2017. High‐efficiency gene targeting in hexaploid wheat using DNA replicons and CRISPR/Cas9. Plant J. 89(6): 1251-1262.

Grenha, A. 2012. Chitosan nanoparticles: a survey of preparation methods. Drug Target. J. 20(4): 291-300.

Gupta, R., A. Ghosh, R. Chakravarti, R. Singh, V. Ravichandiran, S. Swarnakar and D. Ghosh. 2022. Cas13d: a new molecular scissor for transcriptome engineering. Front. Cell Dev. Biol. 10: 866800.

Gurumoorthy, N., F. Nordin, G.J. Tye, W.S. Wan Kamarul Zaman and M.H. Ng. 2022. Non-integrating lentiviral vectors in clinical applications: A glance through. Biomed. 10(1): 107.

Hayashi, H., Y. Kubo, M. Izumida and T. Matsuyama. 2020. Efficient viral delivery of Cas9 into human safe harbor. Sci. Rep. 10(1): 21474.

Himanshu, A., P. Sitasharan and A.K. Singhai. 2011. Liposomes as drug carriers. IJPLS. 2(7): 945-951.

Horii, T., Y. Arai, M. Yamazaki, S. Morita, M. Kimura, M. Itoh and I. Hatada. 2014. Validation of microinjection methods for generating knockout mice by CRISPR/Cas-mediated genome engineering. Sci. Rep. 4(1): 1-6.

Hsu, P.D., E.S. Lander and F. Zhang. 2014. Development and applications of CRISPR-Cas9 for genome engineering. Cell. 157(6): 1262-1278.

Huang, S.L., P.H. Kee, H. Kim, M.R. Moody, S.M. Chrzanowski, R.C. MacDonald and D.D. McPherson. 2009. Nitric oxide-loaded echogenic liposomes for nitric oxide delivery and inhibition of intimal hyperplasia. J. Am. Coll. Cardiol. 54(7): 652-659.

Huang, J., Y. Zhou, J. Li, A. Lu and C. Liang. 2022. CRISPR/ Cas systems: Delivery and application in gene therapy. Front. Bioeng. Biotechnol. 10:942325.

Hughes, T.S., S.J. Langer, S.I. Virtanen, R.A. Chavez, L.R. Watkins, E.D. Milligan and L.A. Leinwand. 2009. Immunogenicity of intrathecal plasmid gene delivery: cytokine release and effects on transgene expression. A cross‐disciplinary journal for research on the science of gene transfer and its clinical applications. J. Genet. Med. 11(9): 782-790.

Ibraheim, R., P.W. Tai, A. Mir, N. Javeed, J. Wang, T.C. Rodríguez and E.J. Sontheimer. 2021. Self inactivating, all-in-one AAV vectors for precision Cas9 genome editing via homology-directed repair in vivo. Nat. Commun. 12(1): 6267.

Joo, K.I. and P. Wang. 2008. Visualization of targeted transduction by engineered lentiviral vectors. Gene Ther. 15(20):1384-1396.

Kaczmarek, J.C., A.K. Patel, K.J. Kauffman, O.S. Fenton, M.J. Webber, M.W. Heartlein, D.G. Anderson. 2016. Polymer lipid nanoparticles for systemic delivery of mRNA to the lungs. Angew. Chem. Int. Ed. 55(44): 13808–13812.

Kaczmarczyk, S.J., K. Sitaraman, H.A. Young, S.H. Hughes J. Agric. Res. 2026, 64(1) and D.K. Chatterjee. 2011. Protein delivery using engineered virus-like particles. Proc. Natl. Acad. Sci. U.S.A. 108(41): 16998-17003.

Kagita, A., M.S. Lung, H. Xu, Y. Kita, N. Sasakawa, T. Iguchi and A. Hotta. 2021. Efficient ssODN mediated targeting by avoiding cellular inhibitory RNAs through precomplexed CRISPR-Cas9/sgRNA ribonucleoprotein. STEM CELL REP. 16(4): 985-996.

Kamimura, K., T. Yokoo, H. Abe, Y. Kobayashi, K. Ogawa, Y. Shinagawa and S. Terai. 2015. Image-guided hydrodynamic gene delivery: current status and future directions. Pharm. 7(3): 213-223.

Kang, Y.K., K. Kwon, J.S. Ryu, H.N. Lee, C. Park and H.J. Chung. 2017. Nonviral genome editing based on a polymer-derivatized CRISPR nanocomplex for targeting bacterial pathogens and antibiotic resistance. Bioconjug. Chem. 28(4): 957-967.

Kar, S., M. Loganathan, K. Dey, P. Shinde, H.Y. Chang, M. Nagai and T.S. Santra. 2018. Single-cell electroporation: current trends, applications and future prospects. J. Micromech. Microeng. 28(12): 123002.

Kazemian, P., S.Y. Yu, S.B. Thomson, A. Birkenshaw, B.R. Leavitt, and C.J.D. Ross. 2022. Lipid-Nanoparticle-Based Delivery of CRISPR/Cas9 Genome-Editing Components. Mol. Pharm. 19(6): 1669–1686.

Kim, H., S.T. Kim, J. Ryu, B.C. Kang, J.S. Kim and S.G. Kim. 2017. CRISPR/Cpf1-mediated DNA-free plant genome editing. Nat. Commun. 8(1): 14406.

Kim, S., D. Kim, S.W. Cho, J. Kim and J.S. Kim. 2014. Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins. Genome Res. 24(6): 1012-1019.

Klein, T. M. 2011. Particle bombardment: an established weapon in the arsenal of plant biotechnologists.

Kocsisova, Z. and V. Coneva. 2023. Strategies for delivery of CRISPR/Cas-mediated genome editing to obtain edited plants directly without transgene integration. Front. Genome Ed. 5: 1209586.

Koo, T., L. Popplewell, T. Athanasopoulos and G. Dickson. 2014. Triple trans-splicing adeno associated virus vectors capable of transferring the coding sequence for full-length dystrophin protein into dystrophic mice. HGT. 25(2): 98-108.

Kotnik, T., L. Rems, M. Tarek and D. Miklavčič. 2019. Membrane electroporation and electropermeabilization: mechanisms and models. Annu. Rev. Biophys. 48(1): 63-91.

Kuluev, B.R., G.R. Gumerova, E.V. Mikhaylova, G.A. Gerashchenkov, N.A. Rozhnova, Z.R. Vershinina, A.V. Khyazev, R.T. Matniyazov A.K. Baymiev, A.K. Baymiev and A.V. Chemeris. 2019. Delivery of CRISPR/Cas components into higher plant cells for genome editing. Russ. J. Plant Physiol. 66: 694-706.

Kunath, K., A. von Harpe, D. Fischer, H. Petersen, U. Bickel, K. Voigt and T. Kissel. 2003. Low-molecular-weight polyethylenimine as a non-viral vector for DNA delivery: comparison of physicochemical properties, transfection distribution efficiency and in vivo with high-molecular-weight polyethylenimine. JCR. 89(1): 113-125.

Kwon, S., C. Tisserant, M. Tulinski, A. Weiberg and M. Feldbrügge. 2020. Inside-out: from endosomes to extracellular vesicles in fungal RNA transport. Fungal Biol. Rev. 34(2): 89-99.

Laforest, L.C. and S.S. Nadakuduti. 2022. Advances in delivery mechanisms of CRISPR gene - editing reagents in plants. Front. Genome Ed. 4: 830178. Le Rhun, A., A. Escalera-Maurer, M. Bratovič and E. Charpentier. 2019. CRISPR-Cas in Streptococcus pyogenes. RNA Biol. 16(4): 380-389.

Lee, C.S., E.S. Bishop, R. Zhang, X. Yu, E.M. Farina, S. Yan and T.C. He. 2017. Adenovirus-mediated gene delivery: potential applications for gene and cell-based therapies in the new era of personalized medicine. Genes Dis. 4(2): 43-63.

Lee, K., M. Conboy, H.M. Park, F. Jiang, H.J. Kim, M.A. Dewitt and N. Murthy. 2017. Nanoparticle delivery of Cas9 ribonucleoprotein and donor DNA in vivo induces homology-directed DNA repair. Nat. Biomed. Eng. 1(11): 889-901.

Lentacker, I., I. De Cock, R. Deckers, S.C. De Smedt and C.T.W. Moonen. 2014. Understanding ultrasound induced sonoporation: definitions and underlying mechanisms. Adv. Drug Deliv. Rev. 72: 49-64.

Li, B., W. Zhao, X. Luo, X. Zhang, C. Li, C. Zeng and Y. Dong. 2017. Engineering CRISPR–Cpf1 crRNAs and mRNAs to maximize genome editing efficiency. Nat. Biomed. Eng. 1(5): 0066.

Li, C. and A. Lieber. 2019. Adenovirus vectors in hematopoietic stem cell genome editing. FEBS letters. 593(24): 3623-3648.

Li, D., J. Liu, B. Guo, C. Liang, L. Dang, C. Lu and G. Zhang. 2016. Osteoclast-derived exosomal miR-214-3p inhibits osteoblastic bone formation. Nat. Commun. 7(1): 10872.

Li, L., Z.Y. He, X.W. Wei, G.P. Gao and Y.Q. Wei. 2015. Challenges in CRISPR/CAS9 delivery: potential roles of nonviral vectors. HGT. 26(7): 452-462.

Li, Z., Z.B. Liu, A. Xing, B.P. Moon, J. P. Koellhoffer, L. Huang and A.M. Cigan. 2015. Cas9- guide RNA directed genome editing in soybean. Plant Physiol. 169(2): 960-970.

Liang, X., J. Potter, S. Kumar, Y. Zou, R. Quintanilla, M. Sridharan and J.D. Chesnut. 2015. Rapid and highly efficient mammalian cell engineering via Cas9 protein transfection. J. Biotech. 208: 44-53.

Liang, Z., K. Chen, T. Li, Y. Zhang, Y. Wang, Q. Zhao and C. Gao. 2017. Efficient DNA free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes. Nat. Commun. 8(1): 1-5.

Liechty, W.B., D.R. Kryscio, B.V. Slaughter and N. A. Peppas. 2010. Polymers for drug delivery systems. Annu. Rev. Chem. Biomol. Eng. 1- 149.

Lin, Y., J. Wu, W. Gu, Y. Huang, Z. Tong, L. Huang and J. Tan. 2018. Exosome liposome hybrid nanoparticles deliver CRISPR/Cas9 system in MSCs. Adv. Sci. 5(4): 1700611.

Lino, C.A., J.C. Harper, J.P. Carney and J. A. Timlin. 2018. Delivering CRISPR: a review of the challenges and approaches. Drug delivery. 25(1): 1234-1257.

Lin-Shiao, E., W.G. Pfeifer,B.R. Shy, M. Saffari Doost, E. Chen, V.S. Vykunta and J.A. Doudna. 2022. CRISPR–Cas9-mediated nuclear transport and genomic integration of nanostructured genes in human primary cells. NAR. 50(3): 1256-1268.

Liu, C., L. Zhang, H. Liu and K. Cheng. 2017. Delivery strategies of the CRISPR-Cas9 gene-editing system for therapeutic applications. J. Control. Release. 266: 17-26.

Liu, Q., D. Fan, D. Adah, Z. Wu, R. Liu, Q.T. Yan and L.P. Liu. 2018. CRISPR/ Cas9-mediated hypoxia inducible factor-1α knockout enhances the antitumor effect of transarterial embolization in hepatocellular carcinoma. Oncol. Rep. 40(5): 2547-2557.

Liu, S., D. Liu, C. Chen, K. Hamamura, A. Moshaverinia, R. Yang and S. Shi. 2015. MSC transplantation improves osteopenia via epigenetic regulation of notch signaling in lupus. Cell Metab. 22(4): 606-618.

Long, C., L. Amoasii, A.A. Mireault, J.R. McAnally, H. Li, E. Sanchez-Ortiz and E. N. Olson. 2016. Postnatal genome editing partially restores dystrophin expression in a mouse model of muscular dystrophy. Sci. 351(6271): 400-403.

Ludwig-Portugall, I., E. Montermann, A. Kremer, A.B. Reske-Kunz and S. Sudowe. 2004. Prevention of long-term IgE antibody production by gene gun–mediated DNA vaccination. JACI. 114(4): 951-957.

Lyu, P. and B. Lu. 2022. New advances in using virus-like particles and related technologies for eukaryotic genome editing delivery. Int. J. Mol. Sci. 23(15): 8750.

Lyu, P., L. Wang and B. Lu. 2020. Virus-like particle mediated CRISPR/Cas9 delivery for efficient and safe genome editing. Life. 10(12): 366.

Ma, X., X. Li and Z. Li. 2023. Transgene-free genome editing in Nicotiana benthamiana with CRISPR/Cas9 delivered by a rhabdovirus vector. PGEMP. 173-185.

Ma, Y., L. Zhang and X. Huang. 2014. Genome modification by CRISPR/Cas9. FEBS J. 281(23): 5186-5193.

Maddalena, A., P, Tornabene, P, Tiberi, R, Minopoli, A, Manfredi, M, Mutarelli, S. Rossi, F. Simonelli, J.K. Naggert, D. Cacchiarelli and A. Auricchio. 2018. Triple vectors expand AAV transfer capacity in the retina. Mol Ther. 26(2): 524-541.

Maddalo, D., E. Manchado, C.P. Concepcion, C. Bonetti, J.A. Vidigal, Y.C. Han, P. Ogrodowski, A. Crippa, N. Rekhtman, E. de Stanchina and S.W. Lowe. 2014. In vivo engineering of oncogenic chromosomal rearrangements with the CRISPR/Cas9 system. Nature. 516(7531):423–427.

Mali, P., L. Yang, K. M. Esvelt, J. Aach, M. Guell, J. E. DiCarlo, J.E. Norville and G. M. Church. 2013. RNA-guided human genome engineering via Cas9. Science. 339(6121):823-826.

Malnoy, M., R. Viola, M. H. Jung, O. J. Koo, S. Kim, J. S. Kim, R. Velasco and C. Nagamangala Kanchiswamy. 2016. DNA free genetically edited grapevine and apple protoplast using CRISPR/Cas9 ribonucleoproteins. Front. Plant Sci. 7:1904.

Mandal, P. K., L. M. Ferreira, R. Collins, T. B. Meissner, C. L. Boutwell, M. Friesen, V. Vrbanac, B.S. Garrison, A. Stortchevoi, D. Bryder and K. Musunuru. 2014. Efficient ablation of genes in human hematopoietic stem and effector cells using CRISPR/ Cas9. Cell Stem Cell. 15(5):643-652.

Mei, Y., Y. Wang, H. Chen, Z. S. Sun and X. D. Ju. 2016. Recent progress in CRISPR/Cas9 technology. J. Genet. Genomics. 43(2):63-75.

Miller, J. B., S. Zhang, P. Kos, H. Xiong, K. Zhou, S. S. Perelman, H. Zhu and D. J. Siegwart. 2017. Non-viral CRISPR/Cas gene editing in vitro and in vivo enabled by synthetic nanoparticle co-delivery of Cas9 mRNA and sgRNA. Angew. Chem. Int. Ed. 56(4):1059-1063.

Milone, M. C. and U. O’Doherty. 2018. Clinical use of lentiviral vectors. Leukemia. 32(7):1529-1541.

Mout, R. and V. M. Rotello. 2017. Cytosolic and nuclear delivery of CRISPR/Cas9-ribonucleoprotein for gene editing using arginine functionalized gold nanoparticles. Bio Protoc. 7(20):e2586.

Mout, R., M. Ray, Y. W. Lee, F. Scaletti and V. M. Rotello. 2017. In vivo delivery of CRISPR/Cas9 for therapeutic gene editing: progress and challenges. Bioconjugate Chem. 28(4):880-884.

Nakagawa, Y., T. Sakuma, T. Sakamoto, M. Ohmuraya, N. Nakagata and T. Yamamoto. 2015. Production of knockout mice by DNA microinjection of various CRISPR/ Cas9 vectors into freeze-thawed fertilized oocytes. BMC Biotechnol. 15(1):1-10.

Naso, M. F., B. Tomkowicz, W. L. Perry III and W. R. Strohl. 2017. Adeno-associated virus (AAV) as a vector for gene therapy. BioDrugs. 31(4):317-334.

Neu, M., O. Germershaus, M. Behe and T. Kissel. 2007. Bioreversibly crosslinked polyplexes of PEI and high molecular weight PEG show extended circulation times in vivo. J. Control. Release. 124(1-2):69-80.

Nishimasu, H., F. A. Ran, P. D. Hsu, S. Konermann, S. I. Shehata, N. Dohmae, R. Ishitani, F. Zhang and O. Nureki. 2014. Crystal structure of Cas9 in complex with guide RNA and target DNA. Cell. 156(5):935-949.

Ortinski, P. I., B. O’Donovan, X. Dong and B. Kantor. 2017. Integrase-deficient lentiviral vector as an all-in-one platform for highly efficient CRISPR/Cas9-mediated gene editing. Mol. Ther. Methods Clin. Dev. 5:153-164.

Ozyigit, I. I. 2020. Gene transfer to plants by electroporation: methods and applications. Mol. Biol. Rep. 47(4):3195-3210.

Pardi, N., S. Tuyishime, H. Muramatsu, K. Kariko, B. L. Mui, Y. K. Tam, T.D. Madden, M.J. Hope and D. Weissman. 2015. Expression kinetics of nucleoside-modified mRNA delivered in lipid nanoparticles to mice by various routes. J. Control. Release. 217:345-351.

Peretti, S., I. Schiavoni, K. Pugliese and M. Federico. 2005. Cell death induced by the herpes simplex virus-1 thymidine kinase delivered by human immunodeficiency virus-1-based virus like particles. Mol. Ther. 12(6):1185-1196.

Petersen, H., K. Kunath, A. L. Martin, S. Stolnik, C. J. Roberts, M. C. Davies and T. Kissel. 2002. Star-Shaped Poly (ethylene glycol)-block-polyethylenimine copolymers enhance DNA condensation of low molecular weight polyethylenimines. Biomacromolecules. 3(5):926-936.

Platt, R. J., S. Chen, Y. Zhou, M.J. Yim, L. Swiech, H.R. Kempton, … and F. Zhang. 2014. CRISPR Cas9 knockin mice for genome editing and cancer modeling. Cell. 159(2):440-455.

Prestwich, B. D., T. Cardi, A. Bakhsh, A. Nicolia and K.K. Bhati. 2023. Novel delivery methods for CRISPR-based plant genome editing. In: A Roadmap for Plant Genome Editing. p. 41-67. Cham: Springer Nature Switzerland.

Qamar, S. A., M. Asgher, N. Khalid and M. Sadaf. 2019. Nanobiotechnology in health sciences: current applications and future perspectives. Biocatal Agric Biotechnol. 22:101388.

Qiao, J., W. Sun, S. Lin, R. Jin, L. Ma and Y. Liu. 2019. Cytosolic delivery of CRISPR/Cas9 ribonucleoproteins for genome editing using chitosan-coated red f luorescent protein. Chem Commun. 55(32):4707-4710.

Qin, W., W. Qin, S.L. Dion, P.M. Kutny, Y. Zhang, A.W. Cheng, N.L. Jillette, A. Malhotra, A.M. Geurts, Y.G. Chen and H. Wang. 2015. Efficient CRISPR/Cas9-mediated genome editing in mice by zygote electroporation of nuclease. Genetics. 200(2):423-430.

Raghavan, A., X. Wang, P. Rogov, L. Wang, X. Zhang, T.S. Mikkelsen and K. Musunuru. 2016. High-throughput screening and CRISPR-Cas9 modeling of causal lipid associated eQTL variants. bioRxiv. 056820.

Ramakrishna, S., A.B.K. Dad, J. Beloor, R. Gopalappa, S.K. Lee and H. Kim. 2014. Gene disruption by cell-penetrating peptide mediated delivery of Cas9 protein and guide RNA. Genome Res. 24(6):1020-1027.

Ramos-Kuri, M., M. Ramos-Kuri, K. Rapti, H. Mehel, S. Zhang, P.S. Dhandapany, L. Liang, A. García-Carrancá, R. Bobe, R. Fischmeister, S. Adnot and D. Lebeche. 2015. Dominant negative Ras attenuates pathological ventricular remodeling in pressure overload cardiac hypertrophy. Biochim. Biophys. Acta. Mol. Cell. Res. 1853(11):2870-2884.

Ran F.A., L. Cong, W.X. Yan, D.A. Scott, J.S. Gootenberg, A.J. Kriz, B. Zetsche, O. Shalem, X. Wu, K.S. Makarova and E.V. Koonin. 2015. In vivo genome editing using Staphylococcus aureus Cas9. Nature. 520:186-191.

Rao, A.Q., A. Bakhsh, S. Kiani, K. Shahzad, A.A. Shahid, T. Husnain and S. Riazuddin. 2009. Retracted: The myth of plant transformation. Biotechnol. Adv. 27(6):753-763.

Rilo-Alvarez, H., A.M. Ledo, A. Vidal and M. Garcia Fuentes. 2021. Delivery of transcription factors as modulators of cell differentiation. Drug Deliv. Transl. Res. 11:426-444.

Rols, M. P. 2008. Mechanism by which electroporation mediates DNA migration and entry into cells and targeted tissues. Electroporation Protocols. 19-33.

Ronzitti, G., D.A. Gross and F. Mingozzi. 2020. Human immune responses to adeno-associated virus (AAV) vectors. Front. Immunol. 11:670.

Ross, J. 1995. mRNA stability in mammalian cells. Microbiol. Rev. 59(3): 423-450.

Ruan, W., M. Zheng, Y. An, Y. Liu, D.B. Lovejoy, M. Hao, Y. Zou, A. Lee, S. Yang, Y. Lu and M. Morsch. 2018. DNA nanoclew templated spherical nucleic acids for siRNA delivery. Chem. Commun. 54(29):3609-3612.

Ryu, J. Y., E.J. Won, H.A.R. Lee, J.H. Kim, E. Hui, H.P. Kim and T.J. Yoon. 2020. Ultrasound activated particles as CRISPR/Cas9 delivery system for androgenic alopecia therapy. Biomaterials. 232:119736.

Saeed, T. and A. Shahzad. 2015. Basic principles behind genetic transformation in plants. In Biotechnological strategies for the conservation of medicinal and ornamental climbers. 327-350. Cham: Springer Int. Publ.

Safari, F., K. Zare, M. Negahdaripour, M. Barekati Mowahed and Y. Ghasemi. 2019. CRISPR Cpf1 proteins: structure, function and implications for genome editing. Cell Biosci. 9:1-21.

Samulski, R. J. and N. Muzyczka. 2014. AAV-mediated gene therapy for research and therapeutic purposes. Annu. Rev. Virol. 1:427-451.

Segall, H. I., E. Yoo, R.E. Sutton. 2003. Characterization and detection of artificial replication-competent lentivirus of altered host range. Mol. Ther. 8(1):118-129.

Shalem, O., N.E. Sanjana, E. Hartenian, X. Shi, D.A. Scott, T.S. Mikkelsen, D. Heckl, B.L. Ebert, D.E. Root, J.G. Doench and F. Zhang. 2014. Genome scale CRISPR-Cas9 knockout screening in human cells. Science. 343(6166):84-87.

Shan, Q., Y. Wang, J. Li and C. Gao. 2014. Genome editing in rice and wheat using the CRISPR/ Cas system. Nat. Protoc. 9(10):2395-2410.

Sharifi-Rad, J., C. Quispe, M. Butnariu, L.S. Rotariu, O. Sytar, S. Sestito, S. Rapposelli, M. Akram, M. Iqbal, A. Krishna and N.V.A. Kumar. 2021. Chitosan nanoparticles as a promising tool in nanomedicine with particular emphasis on oncological treatment. Cancer Cell Int. 21:1-21

Shiraishi, S., T. Imai and M. Otagiri. 1993. Controlled release of indomethacin by chitosan-polyelectrolyte complex: optimization and in vivo/in vitro evaluation. J. Contr. Release. 25(3):217-225.

Srivastava, A., K.M. Mallela, N. Deorkar and G. Brophy. 2021. Manufacturing challenges and rational formulation development for AAV viral vectors. J. Pharm. Sci. 110(7):2609-2624.

Stephens, C. J., E. Kashentseva, W. Everett, L. Kaliberova and D.T. Curiel. 2018. Targeted in vivo knock-in of human alpha-1 antitrypsin cDNA using adenoviral delivery of CRISPR/Cas9. Gene Ther. 25(2):139-156.

Sternberg, S. H. and J.A. Doudna. 2015. Expanding the biologist’s toolkit with CRISPR-Cas9. Mol. Cell. 58(4):568-574. Suda, T., X. Gao, D.B. Stolz and D. Liu. 2007. Structural impact of hydrodynamic injection on mouse liver. Gene Ther. 14(2):129-137.

Sun, W., W. Ji, J.M. Hall, Q. Hu, C. Wang, C.L. Beisel and Z. Gu. 2015. Self-assembled DNA nanoclews for the efficient delivery of CRISPR–Cas9 for genome editing. Angew Chem. 54(41):12029-12033.

Sun, W., T. Jiang, Y. Lu, M. Reiff, R. Mo and Z. Gu. 2014. Cocoon-like self-degradable DNA nanoclew for anticancer drug delivery. J. Am. Chem. Soc. 136(42):14722-14725.

Suresh, B., S. Ramakrishna and H. Kim. 2017. Cell-penetrating peptide-mediated delivery of Cas9 protein and guide RNA for genome editing. In: Eukaryotic Transcriptional and Post-Transcriptional Gene Expression Regulation. p. 81-94.

Tabebordbar, M., K.A. Lagerborg, A. Stanton, E. King, S. Ye, L. Tellez, A. Krunnfusz, S. Tavakoli, J.J. Widrick, K.A. Messemer and E.C. Troiano. 2021. Directed evolution of a family of AAV capsid variants enabling potent muscle-directed gene delivery across species. Cell. 184(19):4919-4938.

Tabebordbar, M., K. Zhu, J.K. Cheng, W.L. Chew, J.J. Widrick, W.X. Yan, C. Maesner, E.Y. Wu, R. Xiao, F.A. Ran and L. Cong. 2016. In vivo gene editing in dystrophic mouse muscle and muscle stem cells. Science. 351(6271):407-411.

Taha, E. A., J. Lee and A. Hotta. 2022. Delivery of CRISPR-Cas tools for in vivo genome editing therapy: trends and challenges. J. Contr. Release. 342:345-361.

Tao, Y., K. Yi, H. Hu, D. Shao and M. Li. 2021. Coassembly of nucleus-targeting gold nanoclusters with CRISPR/Cas9 for simultaneous bioimaging and therapeutic genome editing. J. Mater. Chem. B. 9(1):94-100.

Tasca, F., Q. Wang and M.A. Gonçalves. 2020. Adenoviral vectors meet gene editing: a rising partnership for the genomic engineering of human stem cells and their progeny. Cells. 9(4):953.

Tatsis, N. and H.C. Ertl. 2004. Adenoviruses as vaccine vectors. Mol. Ther. 10(4):616-629.

Taylor, R.E. and M. Zahid. 2020. Cell penetrating peptides, novel vectors for gene therapy. Pharmaceutics. 12(3): 225.

Tomizawa, M., F. Shinozaki, Y. Motoyoshi, T. Sugiyama, S. Yamamoto and M. Sueishi. 2013. Sonoporation: gene transfer using ultrasound. World J. Methodol. 3(4):39.

Tornabene, P., I. Trapani, R. Minopoli, M. Centrulo, M. Lupo, S. de Simone, P. Tiberi, F. Dell’Aquila, E. Marrocco, C. Iodice and A. Iuliano. 2019. Intein-mediated protein trans-splicing expands adeno-associated virus transfer capacity in the retina. Sci. Transl. Med. 11(492):eaav4523.

Trapani, I., P. Tornabene and A. Auricchio. 2021. Large gene delivery to the retina with AAV vectors: are we there yet? Gene Ther. 28(5):220-222.

Uddin, F., C.M. Rudin, T. Sen. 2020. CRISPR gene therapy: applications, limitations, and implications for the future. Front. Oncol. 10:1387.

Valadi, H., K. Ekström, A. Bossios, M. Sjöstrand, J.J. Lee and J.O. Lötvall. 2007. Exosome mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat. Cell. Biol. 9(6):654-659.

Vamvakaki, V. and Chaniotakis, N. A. 2007. Pesticide detection with a liposome based nano-biosensor. Biosens. Bioelectron. 22(12): 2848-2853.

Verdera, H. C., K. Kuranda and F. Mingozzi. 2020. AAV vector immunogenicity in humans: a long journey to successful gene transfer. Mol. Ther. 28(3):723-746.

Voets, O., F. Tielen, E. Elstak, J. Benschop, M. Grimbergen, J. Stallen, R. Janssen, A. van Marle and C. Essrich. 2017. Highly efficient adenoviral gene inactivation by CRISPR/Cas9 in human primary cells. PLoS One. 12(8):e0182974.

Wang, D., H. Mou, S. Li, Y. Li, S. Hough, K. Tran, J. Li, H. Yin, D.G. Anderson, E.J. Sontheimer and Z. Weng. 2015. Adenovirus-mediated somatic genome editing of Pten by CRISPR/Cas9 in mouse liver in spite of Cas9-specific immune responses. Hum. Gene. Ther. 26(7):432-442.

Wang, H. X., M. Li, C.M. Lee, S. Chakraborty, H.W. Kim, G. Bao and K.W. Leong. 2017. CRISPR/Cas9-based genome editing for disease modeling and therapy: challenges and opportunities for nonviral delivery. Chem. Rev. 117(15):9874–9906.

Wang, H., L. Wang, B. Zhong and Z. Dai. 2022. Protein splicing of inteins: a powerful tool in synthetic biology. Front. Bioeng. Biotechnol. 10:810180.

Wang, M. G. Z. X. Q., Z.A. Glass and Q. Xu. 2017. Non viral delivery of genome-editing nucleases for gene therapy. Gene Ther. 24(3):144–150.

Wang, Y., X. Cheng, Q. Shan, Y. Zhang, J. Liu, C. Gao and J.L. Qiu. 2014. Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew. Nat. Biotechnol. 32(9):947–951.

Wang, Y., H.H. Su, Y. Yang, Y. Hu, L. Zhang, P. Blancafort and L. Huang. 2013. Systemic delivery of modified mRNA encoding herpes simplex virus 1 thymidine kinase for targeted cancer gene therapy. Mol. Ther. 21(2):358–367.

Williams, D. J., H.L. Puhl III and S.R. Ikeda. 2010. A simple, highly efficient method for heterologous expression in mammalian primary neurons using cationic lipid-mediated mRNA transfection. Front. Neurosci. 4:181.

Woo, J. W., J. Kim, S.I. Kwon, C. Corvalán, S.W. Cho, H. Kim, S.G. Kim, S.T. Kim, S. Choe and J.S. Kim. 2015. DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins. Nat. Biotechnol. 33(11):1162–1164.

Worthen, C. A., L. Rittié and G.J. Fisher. 2017. Mechanical deformation of cultured cells with hydrogels. In: Fibrosis: Methods and Protocols. p. 245–251.

Xie, K. and Y. Yang. 2013. RNA-guided genome editing in plants using a CRISPR–Cas system. Mol. Plant. 6(6):1975-1983.

Xu, X., T. Wan, H. Xin, D. Li, H. Pan, J. Wu and Y. Ping. 2019. Delivery of CRISPR/Cas9 for therapeutic genome editing. J. Gene Med. 21(7):e3107.

Yan, Y., X. Zhu, Y. Yu, C. Li, Z. Zhang and F. Wang. 2022. Nanotechnology strategies for plant genetic engineering. Adv. Mater. 34(7):2106945.

Yang, H., H. Wang, C.S. Shivalila, A.W. Cheng, L. Shi and R. Jaenisch. 2013. One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering. Cell. 154(6):1370–1379.

Yin, H., W. Xue, S. Chen, R.L. Bogorad, E. Benedetti, M. Grompe, V. Koteliansky, P.A. Sharp, T. Jacks and D.G. Anderson. 2014. Genome editing with Cas9 in adult mice corrects a disease mutation and phenotype. Nat. Biotechnol. 32(6): 551–553.

Yin, H., C.Q. Song, J.R. Dorkin, L.J. Zhu, Y. Li, Q. Wu, A. Park, J. Yang, S. Suresh, A. Bizhanova and A. Gupta. 2016. Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo. Nat. Biotechnol. 34(3):328–333.

Yip, B.H. 2020. Recent advances in CRISPR/Cas9 delivery strategies. Biomolecules. 10(6):839. Zhang, S., J. Shen, D. Li and Y. Cheng. 2021. Strategies in the delivery of Cas9 ribonucleoprotein for CRISPR/Cas9 genome editing. Theranostics. 11(2):614.

Zhang, X.H., X.J. Zhao, B. Li, F.F. Li, P.X. Liu and D.H. Min. 2013. Factors optimization of pollen electroporation transformation and identification of transgenic wheat. Sci. Agric. Sin. 46(12):2403-2411.

Zhang, Y., Z. Liang, Y. Zong, Y. Wang, J. Liu, K. Chen, J.L. Qiu and C. Gao. 2016. Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/ Cas9 DNA or RNA. Nat. Commun. 7:1–8.

Zhang, Z., T. Wan, Y. Chen, Y. Chen, H. Sun, T. Cao, Z. Songyang, G. Tang, C. Wu, Y. Ping and F.J. Xu. 2019. Cationic polymer-mediated CRISPR/ Cas9 plasmid delivery for genome editing. Macromol. Rapid Commun. 40(5):1800068.

Zohra, F.T., E.H. Chowdhury, S. Tada, T. Hoshiba and T. Akaike. 2007. Effective delivery with enhanced translational activity synergistically accelerates mRNA-based transfection. Biochem. Biophys. Res. Commun. 358(1): 373-378.

Zuris, J. A., D.B. Thompson, Y. Shu, J.P. Guilinger, J.L. Bessen, J.H. Hu, M.L. Maeder, J.K. Joung, Z.Y. Chen and D.R. Liu. 2015. Cationic lipid-mediated delivery of proteins enables efficient protein-based genome editing in vitro and in vivo. Nat. Biotechnol. 33(1): 73-80.

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2026-03-31

How to Cite

CRISPR/Cas Delivery Strategies in Animals and Plants: Current Applications, Limitations and Future Directions. (2026). Journal of Agricultural Research (JAR) ., 64(1), 27-47. https://doi.org/10.58475/2026.64.1.1275